## Warning in get_regions_with_probes(regions_to_analyze, positions): The following regions selected have no probes to be analyzed thus were removed from the analysis:
## IGF2:alt-TSS-DMR
## Warning in dir.create(dir_name): '/Users/alexishardy/
## Desktop/GitHub_Files/GitHub/EVIAN/ExampleOfReport/
## ZH2005406k1__ZH1609094r1__ZH1713138m1_MethPctAnalysis' existe déjÃ
## Warning in dir.create(paste0(dir_name, "/", "MethPctPlot_wholeGenome")):
## '/Users/alexishardy/Desktop/GitHub_Files/GitHub/EVIAN/ExampleOfReport/
## ZH2005406k1__ZH1609094r1__ZH1713138m1_MethPctAnalysis/MethPctPlot_wholeGenome'
## existe déjÃ
## Warning in dir.create(paste0(dir_name, "/", "MethPctPlot_perRegion")): '/
## Users/alexishardy/Desktop/GitHub_Files/GitHub/EVIAN/ExampleOfReport/
## ZH2005406k1__ZH1609094r1__ZH1713138m1_MethPctAnalysis/MethPctPlot_perRegion'
## existe déjÃ
| Date of report | 2022-04-25 19:00:59 |
| Software version | 0.8 |
| Nb of tested samples | 3 |
| Names of tested samples | ZH2005406k1 ZH1609094r1 ZH1713138m1 |
| Control population filename | Control_population.csv.gz |
| Nb of tested cpg probes | 216 |
| Nb of tested regions | 7 |
| Mean size of tested regions | 2753.286 |
| Min|Max size of tested regions | 961-5047 |
| Mean probe count per tested region | 30.85714 |
| Min|Max probe count per tested region | 6-61 |
| Nb of tested control cpg probes | 52 |
| Nb of control regions | 2 |
| Mean size of control regions | 3004 |
| Min|Max size of control regions | 961-5047 |
| Mean probe count per control region | 26 |
| Min|Max probe count per control region | 9-43 |
| Date of report | 2022-04-25 19:00:59 |
| group | region_name | position_hg38 | ctrlPop | ZH2005406k1 | ZH1609094r1 | ZH1713138m1 |
|---|---|---|---|---|---|---|
| PHP | GNAS A/B:TSS-DMR | chr20:58888210-58890120 | 53.231 | -3.534 | -41.347 | -10.372 |
| BWS PHP | GNAS-AS1:TSS-DMR | chr20:58850924-58852977 | 46.255 | -2.480 | -14.425 | -8.721 |
| BWS PHP SRS | GNAS-NESP:TSS-DMR | chr20:58838984-58842960 | 51.702 | -7.261 | -12.190 | -11.286 |
| PHP | GNAS-XL:Ex1-DMR | chr20:58854222-58856248 | 55.667 | -4.701 | -9.951 | -9.034 |
| BWS SRS | H19/IGF2:IG-DMR | chr11:1997849-2002896 | 55.635 | -5.395 | -10.150 | -8.581 |
| BWS SRS | IGF2:Ex9-DMR | chr11:2132761-2133722 | 47.114 | 8.530 | 0.519 | 1.019 |
| KOS14 MLID PHP TS14 | MEG3:TSS-DMR | chr14:100824219-100827519 | 53.789 | -5.236 | -12.359 | -9.636 |