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## Warning in get_regions_with_probes(regions_to_analyze, positions): The following regions selected have no probes to be analyzed thus were removed from the analysis:
## IGF2:alt-TSS-DMR
## Warning in dir.create(dir_name): '/Users/alexishardy/
## Desktop/GitHub_Files/GitHub/EVIAN/ExampleOfReport/
## ZH2005406k1__ZH1609094r1__ZH1713138m1_MethPctAnalysis' existe déjà
## Warning in dir.create(paste0(dir_name, "/", "MethPctPlot_wholeGenome")):
## '/Users/alexishardy/Desktop/GitHub_Files/GitHub/EVIAN/ExampleOfReport/
## ZH2005406k1__ZH1609094r1__ZH1713138m1_MethPctAnalysis/MethPctPlot_wholeGenome'
## existe déjà
## Warning in dir.create(paste0(dir_name, "/", "MethPctPlot_perRegion")): '/
## Users/alexishardy/Desktop/GitHub_Files/GitHub/EVIAN/ExampleOfReport/
## ZH2005406k1__ZH1609094r1__ZH1713138m1_MethPctAnalysis/MethPctPlot_perRegion'
## existe déjà

General information

Date of report 2022-04-25 19:00:59
Software version 0.8
Nb of tested samples 3
Names of tested samples ZH2005406k1 ZH1609094r1 ZH1713138m1
Control population filename Control_population.csv.gz
Nb of tested cpg probes 216
Nb of tested regions 7
Mean size of tested regions 2753.286
Min|Max size of tested regions 961-5047
Mean probe count per tested region 30.85714
Min|Max probe count per tested region 6-61
Nb of tested control cpg probes 52
Nb of control regions 2
Mean size of control regions 3004
Min|Max size of control regions 961-5047
Mean probe count per control region 26
Min|Max probe count per control region 9-43
Date of report 2022-04-25 19:00:59


Methylation Percentage difference distribution per sample

ZH2005406k1

ZH1609094r1

ZH1713138m1


Methylation Percentage per region per sample


Methylation Percentage difference per region

Mean methylation Percentage (%)
Difference against ctrlPop
group region_name position_hg38 ctrlPop ZH2005406k1 ZH1609094r1 ZH1713138m1
PHP GNAS A/B:TSS-DMR chr20:58888210-58890120 53.231 -3.534 -41.347 -10.372
BWS PHP GNAS-AS1:TSS-DMR chr20:58850924-58852977 46.255 -2.480 -14.425 -8.721
BWS PHP SRS GNAS-NESP:TSS-DMR chr20:58838984-58842960 51.702 -7.261 -12.190 -11.286
PHP GNAS-XL:Ex1-DMR chr20:58854222-58856248 55.667 -4.701 -9.951 -9.034
BWS SRS H19/IGF2:IG-DMR chr11:1997849-2002896 55.635 -5.395 -10.150 -8.581
BWS SRS IGF2:Ex9-DMR chr11:2132761-2133722 47.114 8.530 0.519 1.019
KOS14 MLID PHP TS14 MEG3:TSS-DMR chr14:100824219-100827519 53.789 -5.236 -12.359 -9.636


Methylation Percentage profiles

GNAS A/B:TSS-DMR

GNAS-AS1:TSS-DMR

GNAS-NESP:TSS-DMR

GNAS-XL:Ex1-DMR

H19/IGF2:IG-DMR

IGF2:Ex9-DMR

MEG3:TSS-DMR